University of Pittsburgh

The Koldamova/ Lefterov Lab

 

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Bioinformatics

Data Processing
Subread
STAR
Homer
samtools
Picard
mirPro

R
WGCNA
edgeR
DEseq2
yacca

External sources
DAVID
IPA
GSEA
Cytoscape
String


Publically Available Datasets

  • Lefterov I, Schug J, Mounier A, Nam KN, Fitz NF, Koldamova R.
    RNA-sequencing reveals transcriptional up-regulation of Trem2 in response to bexarotene treatment.
    Neurobiology of Disease 2015 Oct 15; 82:132-40.
    DOI:10.1016/j.nbd.2015.05.019 PMID:4640940
  • GEO:GSE77569